I then decided to try the other suggestion of changeing the complexity of the marker, this did not make any difference. But I did keep these re-designed markers because it is an easier marker to read.
Then I thought before I play around with the format of the video why not try the pace of the sequence. Therefore i doubled the pace from 5 seconds to two and a half. Then when this played in processing it played as 5 seconds long which was the length i wanted. So i have solved the problem that needed solveing.

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